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Vandermeer, J. H., I. Perfecto, S. Philpott, and M. Jahi Chappell. Refocusing conservation in the landscape: The matrix matters. In Harvey, C. (ed) Conservation in tropical agricultural landscapes. (in press).
Vandermeer, J., I. Perfecto, and S. M. Phlpott. 2007. Clusters of ant colonies and robust criticality in a tropical agroecosystem. Nature (in press).
Vandermeer, J. H., and I. Perfecto. The diverse faces of ecosystem engineers in agroecosystems. in Cuddingham, K., J. E. Byers, W. G. Wilson, and A. Hastings (eds) Ecosystem Engineering, Academic Press (2007).
Vandermeer, J. 2007. Cascading thresholds to heteroclinicity in an ecosystem model. Ecosystem Dynamics (in press)
Vandermeer, J., and I. Perfecto. 2007. Tropical conservation and grass roots social movements: Ecological theory and social justice. Bull. Ecol. Soc. Am. 88:171-175..
Vandermeer, J. and I. Perfecto. 2007. The agricultural matrix and a future paradigm for conservation. Conservation Biology 21:274-277.
Vandermeer, J. 2006. Coupled oscillators and population dynamics. BioScience 56:967-975.
Vandermeer, J. and I. Perfecto. 2006. A keystone mutualism drives pattern in a power function. Science, 17:1000-1002.
Vandermeer, J., H. Liere, and B. Lin. 2006. Effects of predation pressure on species packing on a resource gradient: insights from nonlinear dynamics. Theor. Pop. Biol. 69:395-408.
Vandermeer, J. H. 2006. Omnivory and the stability of food webs. J. Theor. Biol. 238:497-504.
Vandermeer, J. H., and M. Pascual. 2005. Competitive coexistence through intermediate polyphagy. Ecological Complexity, 3:37-43.
Vandermeer, J. H. and I. Perfecto. 2005. A breakfast of biodiversity: The true causes of rain forest destruction (second edition). Institute for Food and Development Policy.
Vandermeer, J. H. and D. E. Goldberg. 2003. Elementary Population Ecology (with D. Goldberg) Princeton University Press.
Vandermeer, J. H. 2002. Tropical Agroecosystems (edited volume). CRC Press, Boca Raton.
Vandermeer, J. H. 2004. Book Review: Chaos in ecology , Cushing et al. Quarterly Review of Biology, 79:104-106.
Vandermeer, J. H. 2004. Book Review: Niche construction. Olding-Smee et al., Science 303:472-474.
Vandermeer, J. H., I. Granzow de la Cerda, I. Perfecto, D. H,. Boucher, J. Ruiz and A. Kaufmann. 2004. Multiple basins of attraction in a tropical rain forest: evidence for non-equilibrium community structure. Ecology 85:575-579.
Vandermeer, J. H. 2004. Wada basins and qualitative unpredictability in ecological models. Ecol. Modelling 176:65-74.
Vandermeer, J. H. 2004. Coupled oscillations in food webs: Balancing competition and mutualism in simple ecological models. Am. Nat. 163:857-867
Armbrecht, I., I. Perfecto, and J. Vandermeer. 2004. Enigmatic biodiversity correlations: litter ant biodiversity in a coffee landscape. Science 304:284-286.
Philpott, S. M. , J. Maldonado, J. Vandermeer, I. Perfecto. 2004. Taking trophic cascades up a level: behaviorially-modified effects of phorid flies on ants and ant prey in coffee agroecosystems. Oikos 105:141-147.
Vandermeer, J. H. and I. Granzow de la Cerda. 2004. Height dynamics of the thinning canopy of a tropical rain forest: 14 years of succession in a post-hurricane forest in Nicaragua. Forest Ecology and Management, 199:125-135.
Koelle, K. and J. Vandermeer. 2005. Dispersal-induced desynchronization: from metapopulations to metacommunities. Ecol. Letters, 8:167.
Vandermeer, J. and I. Perfecto. 2005. The future of farming and conservation. Letter to Science, Vol 308:1257-1258.
Perfecto, I., J. Vandermeer, L. Soto, y A. Mas. 2005. Biodiversity, yield and shade coffee certification. Ecological Economics, 54:435-446.
Vandermeer, J. H. and P. Yodzis. 1999. Basin Boundary Collision as a model of discontinuous change in ecosystems. Ecology 80:1817-1827.
Vandermeer, J. H., D. Boucher, I. Granzow de la Cerda, I. Perfecto, and J. Ruiz. 2000. Hurricanes and tropical species diversity. Science, 290:788-791.
Vandermeer, J. H., L. Stone, and B. Blasius. 2001. Categories of chaos and fractal basin boundaries in forced predator-prey models. Chaos, solitons and fractals 12:265-276.
Vandermeer and Perfecto. 1998. The political ecology of deforestation in Central America. Science as Culture 7:519-555.
Vandermeer and Maruca.1998. Indirect effects with a keystone predator: coexistence and chaos. Journal of Theoretical Population Biology 54:38-43.
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